Why Obsidian? Interoperability. No vendor lock-in. Freedom to use other apps. Multiplatform and Markdown support. Note/Character/Location/Planet linking. Extensibility with many available and useful plug-ins.
For novel writers specifically, Quoll Writer is actually the best available to be honest. However, the developer doesn't really care about Linux. The Linux app is an afterthought to him/her, and using the Windows version with WINE for compatibility may not work as expected or at all. All this, and the fact that files cannot be easily edited by other apps, similar to NovelWriter and Notesnook below.
NovelWriter is pretty much like a fusion between Obsidian and Quoll Writer, but with fewer features. But the developer fully supports Linux. The only real issues are importing notes and interoperability. You cannot import a folder, so you'd have to import them one-by-one. For someone who doesn't have much, it's not a big problem, though. As for interoperability, your files aren't stored with the names you expect, so editing with other apps is not feasible.
Notesnook. It's pretty much Notion, so it's great, but I can't edit my notes or stories unless I'm using it, so that's a HUGE no-go for me. That said, if you know that you have no intention of using any other app, then it's a great option since your notes will also be encrypted. Not just private, but also secure.
Joplin wasn't included in this list because it is (currently) inferior to all 4 of the above in small to large ways. It's getting better with every update, though.
Lastly, every writer is different. Depending on what you are writing, you may have different needs, and I guarantee you that a good enough, if not perfect, app is available on Linux for you. Writing tools, in all their forms, seem to be the easiest tools to find great alternatives for. In fact, this was written in Geany, a development (coding) tool, and I'm not a developer. It's just perfect for stuff like this. If you don't like my choices, click on the app to search for alternatives right here on this website. There are plenty.